30 January 2023>: Clinical Research
Polymorphisms in and Genes Contribute to the Susceptibility to High Myopia-Induced Cataract in Han Chinese Population
Bo Ma 1ABDEF* , Wenpei Zhang 2BC* , Xiaochen Wang 2BC* , Huili Jiang 3BF , Li Tang 3BF , Wen Yang 3BF , Qianyan Kang 1A* , Juan Cao 3BFDOI: 10.12659/MSM.937702
Med Sci Monit 2023; 29:e937702
Table 7 eQTL signals between SNP rs17739338 and CAPRIN2 in multiple types of human tissues.
Gene | Variant ID | SNP | P-value | NES | T-statistic | Tissue |
---|---|---|---|---|---|---|
chr12_30731158_C_T_b38 | rs17739338 | 3.40E-10 | −0.33 | −6.4 | Adipose – Subcutaneous | |
chr12_30731158_C_T_b38 | rs17739338 | 1.20E-09 | −0.32 | −6.2 | Adipose – Visceral (Omentum) | |
chr12_30731158_C_T_b38 | rs17739338 | 4.2E-06 | −0.41 | −4.7 | Adrenal Gland | |
chr12_30731158_C_T_b38 | rs17739338 | 4.20E-04 | −0.19 | −3.6 | Artery – Aorta | |
chr12_30731158_C_T_b38 | rs17739338 | 1.00E-05 | −0.37 | −4.5 | Artery – Coronary | |
chr12_30731158_C_T_b38 | rs17739338 | 5.1E-06 | −0.2 | −4.6 | Artery – Tibial | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0034 | −0.35 | −3 | Brain – Amygdala | |
chr12_30731158_C_T_b38 | rs17739338 | 5.20E-05 | −0.32 | −4.2 | Brain – Anterior cingulate cortex (BA24) | |
chr12_30731158_C_T_b38 | rs17739338 | 1.40E-07 | −0.28 | −5.5 | Brain – Caudate (basal ganglia) | |
chr12_30731158_C_T_b38 | rs17739338 | 6.50E-10 | −0.52 | −6.7 | Brain – Cerebellar Hemisphere | |
chr12_30731158_C_T_b38 | rs17739338 | 2.5E-06 | −0.5 | −4.9 | Brain – Cerebellum | |
chr12_30731158_C_T_b38 | rs17739338 | 9.60E-05 | −0.32 | −4 | Brain – Cortex | |
chr12_30731158_C_T_b38 | rs17739338 | 1.20E-07 | −0.38 | −5.6 | Brain – Frontal Cortex (BA9) | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0021 | −0.21 | −3.1 | Brain – Hippocampus | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0073 | −0.27 | −2.7 | Brain – Hypothalamus | |
chr12_30731158_C_T_b38 | rs17739338 | 2.10E-08 | −0.37 | −5.9 | Brain – Nucleus accumbens (basal ganglia) | |
chr12_30731158_C_T_b38 | rs17739338 | 2.00E-07 | −0.33 | −5.5 | Brain – Putamen (basal ganglia) | |
chr12_30731158_C_T_b38 | rs17739338 | 5.70E-09 | −0.57 | −6.4 | Brain – Spinal cord (cervical c-1) | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0005 | −0.29 | −3.6 | Brain – Substantia nigra | |
chr12_30731158_C_T_b38 | rs17739338 | 2.10E-07 | −0.28 | −5.3 | Breast – Mammary Tissue | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0019 | −0.14 | −3.1 | Cells – Cultured fibroblasts | |
chr12_30731158_C_T_b38 | rs17739338 | 0.6500 | −0.047 | −0.46 | Cells – EBV-transformed lymphocytes | |
chr12_30731158_C_T_b38 | rs17739338 | 1.5E-06 | −0.32 | −4.9 | Colon – Sigmoid | |
chr12_30731158_C_T_b38 | rs17739338 | 5.00E-13 | −0.31 | −7.6 | Colon – Transverse | |
chr12_30731158_C_T_b38 | rs17739338 | 6.20E-05 | −0.19 | −4 | Esophagus – Mucosa | |
chr12_30731158_C_T_b38 | rs17739338 | 3.50E-12 | −0.32 | −7.2 | Esophagus – Muscularis | |
chr12_30731158_C_T_b38 | rs17739338 | 1.90E-05 | −0.38 | −4.4 | Heart – Atrial Appendage | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0017 | −0.24 | −3.2 | Heart – Left Ventricle | |
chr12_30731158_C_T_b38 | rs17739338 | NaN | NaN | NaN | Kidney – Medulla | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0070 | −0.31 | −2.7 | Liver | |
chr12_30731158_C_T_b38 | rs17739338 | 1.10E-08 | −0.4 | −5.8 | Lung | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0005 | −0.35 | −3.6 | Minor Salivary Gland | |
chr12_30731158_C_T_b38 | rs17739338 | 0.7900 | 0.014 | 0.27 | Muscle – Skeletal | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0032 | −0.11 | −3 | Nerve – Tibial | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0043 | −0.29 | −2.9 | Ovary | |
chr12_30731158_C_T_b38 | rs17739338 | 4.30E-15 | −0.49 | −8.4 | Pancreas | |
chr12_30731158_C_T_b38 | rs17739338 | 1.70E-18 | −0.81 | −9.7 | Pituitary | |
chr12_30731158_C_T_b38 | rs17739338 | 6.5E-06 | −0.43 | −4.6 | Prostate | |
chr12_30731158_C_T_b38 | rs17739338 | 6.60E-05 | −0.17 | −4 | Skin – Not Sun Exposed (Suprapubic) | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0045 | −0.12 | −2.9 | Skin – Sun Exposed (Lower leg) | |
chr12_30731158_C_T_b38 | rs17739338 | 1.10E-08 | −0.35 | −6.1 | Small Intestine – Terminal Ileum | |
chr12_30731158_C_T_b38 | rs17739338 | 1.00E-11 | −0.55 | −7.3 | Spleen | |
chr12_30731158_C_T_b38 | rs17739338 | 1.30E-05 | −0.29 | −4.4 | Stomach | |
chr12_30731158_C_T_b38 | rs17739338 | 3.5E-06 | −0.22 | −4.7 | Testis | |
chr12_30731158_C_T_b38 | rs17739338 | 2.10E-32 | −0.49 | −13 | Thyroid | |
chr12_30731158_C_T_b38 | rs17739338 | 3.80E-05 | −0.38 | −4.3 | Uterus | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0140 | −0.18 | −2.5 | Vagina | |
chr12_30731158_C_T_b38 | rs17739338 | 0.0550 | −0.076 | −1.9 | Whole Blood | |
NES – normalized effect size. |