30 January 2023>: Clinical Research
Polymorphisms in and Genes Contribute to the Susceptibility to High Myopia-Induced Cataract in Han Chinese Population
Bo Ma 1ABDEF* , Wenpei Zhang 2BC* , Xiaochen Wang 2BC* , Huili Jiang 3BF , Li Tang 3BF , Wen Yang 3BF , Qianyan Kang 1A* , Juan Cao 3BFDOI: 10.12659/MSM.937702
Med Sci Monit 2023; 29:e937702
Table 6 eQTL signals between SNP rs890069 and TRIB2 in multiple types of human tissues.
Gene | Variant ID | SNP | P-value | NES | T-statistic | Tissue |
---|---|---|---|---|---|---|
chr2_12727378_C_T_b38 | rs890069 | 1.90E-07 | −0.16 | −5.30 | Adipose – Subcutaneous | |
chr2_12727378_C_T_b38 | rs890069 | 2.20E-07 | −0.19 | −5.30 | Adipose – Visceral (Omentum) | |
chr2_12727378_C_T_b38 | rs890069 | 6.70E-05 | −0.23 | −4.10 | Adrenal Gland | |
chr2_12727378_C_T_b38 | rs890069 | 0.0003 | −0.16 | −3.70 | Artery – Aorta | |
chr2_12727378_C_T_b38 | rs890069 | 0.0780 | −0.13 | −1.80 | Artery – Coronary | |
chr2_12727378_C_T_b38 | rs890069 | 0.0022 | −0.09 | −3.10 | Artery – Tibial | |
chr2_12727378_C_T_b38 | rs890069 | 0.3100 | −0.08 | −1.00 | Brain – Amygdala | |
chr2_12727378_C_T_b38 | rs890069 | 0.5600 | 0.04 | 0.59 | Brain – Anterior cingulate cortex (BA24) | |
chr2_12727378_C_T_b38 | rs890069 | 0.0030 | −0.14 | −3.00 | Brain – Caudate (basal ganglia) | |
chr2_12727378_C_T_b38 | rs890069 | 0.4500 | 0.04 | 0.76 | Brain – Cerebellar Hemisphere | |
chr2_12727378_C_T_b38 | rs890069 | 0.9900 | 3.90E-04 | 0.01 | Brain – Cerebellum | |
chr2_12727378_C_T_b38 | rs890069 | 0.0014 | −0.14 | −3.20 | Brain – Cortex | |
chr2_12727378_C_T_b38 | rs890069 | 0.3000 | −0.06 | −1.00 | Brain – Frontal Cortex (BA9) | |
chr2_12727378_C_T_b38 | rs890069 | 0.0590 | −0.08 | −1.90 | Brain – Hippocampus | |
chr2_12727378_C_T_b38 | rs890069 | 0.4800 | 0.05 | 0.71 | Brain – Hypothalamus | |
chr2_12727378_C_T_b38 | rs890069 | 0.4500 | −0.03 | −0.75 | Brain – Nucleus accumbens (basal ganglia) | |
chr2_12727378_C_T_b38 | rs890069 | 0.3000 | −0.05 | −1.00 | Brain – Putamen (basal ganglia) | |
chr2_12727378_C_T_b38 | rs890069 | 0.0810 | −0.15 | −1.80 | Brain – Spinal cord (cervical c-1) | |
chr2_12727378_C_T_b38 | rs890069 | 0.1400 | −0.12 | −1.50 | Brain – Substantia nigra | |
chr2_12727378_C_T_b38 | rs890069 | 9.00E-07 | −0.18 | −5.00 | Breast – Mammary Tissue | |
chr2_12727378_C_T_b38 | rs890069 | 8.00E-10 | −0.11 | −6.30 | Cells – Cultured fibroblasts | |
chr2_12727378_C_T_b38 | rs890069 | 0.31 | −0.08 | −1.00 | Cells – EBV-transformed lymphocytes | |
chr2_12727378_C_T_b38 | rs890069 | 0.016 | −0.12 | −2.40 | Colon – Sigmoid | |
chr2_12727378_C_T_b38 | rs890069 | 0.0035 | −0.08 | −2.90 | Colon – Transverse | |
chr2_12727378_C_T_b38 | rs890069 | 0.00034 | −0.10 | −3.60 | Esophagus – Mucosa | |
chr2_12727378_C_T_b38 | rs890069 | 6.20E-07 | −0.19 | −5.10 | Esophagus – Muscularis | |
chr2_12727378_C_T_b38 | rs890069 | 7.3E-06 | −0.18 | −4.60 | Heart – Atrial Appendage | |
chr2_12727378_C_T_b38 | rs890069 | 5.2E-06 | −0.19 | −4.60 | Heart – Left Ventricle | |
chr2_12727378_C_T_b38 | rs890069 | NaN | NaN | NaN | Kidney – Medulla | |
chr2_12727378_C_T_b38 | rs890069 | 0.022 | −0.13 | −2.30 | Liver | |
chr2_12727378_C_T_b38 | rs890069 | 8.30E-07 | −0.20 | −5.00 | Lung | |
chr2_12727378_C_T_b38 | rs890069 | 0.5000 | −0.05 | −0.67 | Minor Salivary Gland | |
chr2_12727378_C_T_b38 | rs890069 | 4.10E-05 | −0.13 | −4.10 | Muscle – Skeletal | |
chr2_12727378_C_T_b38 | rs890069 | 5.10E-08 | −0.18 | −5.50 | Nerve – Tibial | |
chr2_12727378_C_T_b38 | rs890069 | 0.0001 | −0.22 | −3.90 | Ovary | |
chr2_12727378_C_T_b38 | rs890069 | 5.20E-05 | −0.14 | −4.10 | Pancreas | |
chr2_12727378_C_T_b38 | rs890069 | 4.00E-07 | −0.22 | −5.20 | Pituitary | |
chr2_12727378_C_T_b38 | rs890069 | 0.3500 | −0.05 | −0.93 | Prostate | |
chr2_12727378_C_T_b38 | rs890069 | 8.30E-08 | −0.16 | −5.50 | Skin – Not Sun Exposed (Suprapubic) | |
chr2_12727378_C_T_b38 | rs890069 | 1.1E-06 | −0.15 | −4.90 | Skin – Sun Exposed (Lower leg) | |
chr2_12727378_C_T_b38 | rs890069 | 0.0260 | −0.10 | −2.30 | Small Intestine – Terminal Ileum | |
chr2_12727378_C_T_b38 | rs890069 | 0.0300 | −0.12 | −2.20 | Spleen | |
chr2_12727378_C_T_b38 | rs890069 | 0.0004 | −0.13 | −3.60 | Stomach | |
chr2_12727378_C_T_b38 | rs890069 | 0.0002 | −0.10 | −3.80 | Testis | |
chr2_12727378_C_T_b38 | rs890069 | 0.0005 | −0.14 | −3.50 | Thyroid | |
chr2_12727378_C_T_b38 | rs890069 | 0.4300 | −0.09 | −0.79 | Uterus | |
chr2_12727378_C_T_b38 | rs890069 | 0.0030 | −0.32 | −3.00 | Vagina | |
chr2_12727378_C_T_b38 | rs890069 | 2.50E-09 | −0.10 | −6.10 | Whole Blood | |
NES – normalized effect size. |